| Commands | For Windows | For Mac | For Touchscreens |
| Identify Atom | HOVER | HOVER | - |
| Zoom | SCROLL or SHIFT+LEFT-DRAG (vertical) or LEFT-DRAG (vertical along right side) | SCROLL or SHIFT+LEFT-DRAG (vertical) or LEFT-DRAG (vertical along right side) | PINCH |
| Stop Rotation | LEFT-CLICK | LEFT-CLICK | TAP |
| Rotate Camera X, Y | LEFT-DRAG | LEFT-DRAG | SWIPE |
| Rotate Camera Z | ALT+LEFT-DRAG or SHIFT+RIGHT-DRAG | OPT+LEFT-DRAG or SHIFT+RIGHT-DRAG | - |
| Center on Atom | CTRL+SHIFT+LEFT-CLICK | CMD+SHIFT+LEFT-CLICK | - |
| Translate | CTRL+RIGHT-DRAG | CMD+RIGHT-DRAG | - |
| Measure | LEFT-DOUBLE-CLICK | LEFT-DOUBLE-CLICK | DOUBLE-TAP |
| Show JSmol Menu | RIGHT-CLICK or CTRL+LEFT-CLICK | RIGHT-CLICK or CMD+LEFT-CLICK | - |